PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002649P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 179aa    MW: 20234.1 Da    PI: 8.8201
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002649P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.92.2e-3856114260
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                     +ek+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvP+G+grrk k 
  MELO3C002649P1  56 PEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKP 114
                     68999***************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2855113IPR003851Zinc finger, Dof-type
PfamPF027016.4E-3258113IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.3660114IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106298IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010214Biological Processseed coat development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1902455Biological Processnegative regulation of stem cell population maintenance
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MMGERKHDKN NEDQHGGGIK LFGATIMLQN KRQIIKEEEE EEEANKSDQQ TLEKRPEKII  60
PCPRCKSMDT KFCYFNNYNV NQPRHFCKGC QRYWTAGGAL RNVPIGAGRR KTKPPCRTFG  120
GLPENCVFDS SGIVTVQPFE LEGMVEKWHA VAAAATQGGF RQILPVKRRR DCQDGQTC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00166DAPTransfer from AT1G29160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443229.11e-133PREDICTED: dof zinc finger protein DOF1.5
SwissprotO229674e-58CDF4_ARATH; Cyclic dof factor 4
SwissprotP683506e-58DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLA0A0A0LV521e-119A0A0A0LV52_CUCSA; Uncharacterized protein
STRINGVIT_10s0003g01260.t013e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64833251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.11e-58Dof family protein